ProtyQuant: Quantifying protein presence from accumulated peptide probabilities
Windows 64-bit installer
Graphical User Interface (GUI) version of ProtyQuant. Please check the BitBucket repository for the latest version (see below).
6 pepXML files of yeast extract, spiked with 48 human proteins (Sigma Universal Proteomics Standard UPS1) in concentrations of 25 and 50 fmol. FASTA file 1: UPS sequences, FASTA file 2: combined data base with UPS and yeast sequences.
Source code (Python and C++)